These new functions are still a work in progress, but by way of documentation for anyone brave enough to try, here is the gist of things.
MRS_struct = GannetLoad({'gabafile.SDAT'},{'waterfile.SDAT'});
MRS_struct = GannetFit(MRS_struct);
MRS_struct=GannetMask_Philips('gabafile.SPAR','T1.nii',MRS_struct,1);
MRS_struct = GannetSegment(MRS_struct);
MRS_struct = GannetLoad({'gabafile.SDAT'},{'waterfile.SDAT'});
MRS_struct = GannetFit(MRS_struct);
MRS_struct=GannetMask_Philips('gabafile.SPAR','T1.nii',MRS_struct,1);
MRS_struct = GannetSegment(MRS_struct);